RaxML-NG

RaxML-NG is a tool to infer phylogenetic trees. The RaxML-NG uses Maximum Likelihood (ML) and has functions for transfer bootstrap support metrics and detecting terraces within tree space.

Topic

Phylogenetics;Agricultural science;Phylogenomics

Detail

  • Operation: Phylogenetic tree generation (maximum likelihood and Bayesian methods);Phylogenetic tree bootstrapping

  • Software interface: Command-line user interface

  • Language: C

  • License: GPL-3

  • Cost: Free

  • Version name: 8.2.12

  • Credit: Klaus Tschira Foundation, European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation program, Ministry of Science, Research and the Arts of Baden-Württemberg

  • Input: -

  • Output: -

  • Contact: Vital-IT helpdesk projects at vital-it.ch, Alexey M Kozlov alexey.kozlov@h-its.org, Lukas Hübner lukas.huebner@h-its.org, Lukas Hübner lukas.huebner@kit.edu

  • Collection: --

  • Maturity: Stable

Publications

  • Exploring Parallel MPI Fault Tolerance Mechanisms for Phylogenetic Inference with RAxML-NG
  • Hübner L, Kozlov AM, Hespe D, Sanders P, Stamatakis A. Exploring Parallel MPI Fault Tolerance Mechanisms for Phylogenetic Inference with RAxML-NG. Bioinformatics. 2021 May 26:btab399. doi: 10.1093/bioinformatics/btab399. Epub ahead of print. PMID: 34037680.
  • https://doi.org/10.1093/bioinformatics/btab399
  • PMID: 34037680
  • PMC: -
  • RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood phylogenetic inference.
  • Kozlov AM, Darriba D, Flouri T, Morel B, Stamatakis A (2019). RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood phylogenetic inference. Bioinformatics 35(21): 4453-4455.
  • https://doi.org/10.1093/bioinformatics/btz305
  • PMID: 31070718
  • PMC: PMC6821337

Download and documentation

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