ReactomePA
ReactomePA is a software tool that utilizes the Reactome database to perform enrichment analyses on genomic data. It allows users to analyze genomic loci's functional significance, such as cis-regulatory elements and non-coding regions. ReactomePA offers various visualization options to create high-quality figures for publication purposes.
Topic
Molecular interactions, pathways and networks;Data visualisation
Detail
Operation: Pathway or network analysis
Software interface: Command-line user interface,Library
Language: R
License: GNU General Public License, version 2
Cost: Free
Version name: 1.46.0
Credit: -
Input: Gene ID (NCBI) [Textual format]
Output: Dotplot [Image format], Pathway or network [Image format], P-value [Image format]
Contact: Guangchuang Yu guangchuangyu@gmail.com
Collection: -
Maturity: Stable
Publications
- ReactomePA: an R/Bioconductor package for reactome pathway analysis and visualization.
- Yu G and He QY. ReactomePA: an R/Bioconductor package for reactome pathway analysis and visualization. ReactomePA: an R/Bioconductor package for reactome pathway analysis and visualization. 2016; 12:477-9. doi: 10.1039/c5mb00663e
- https://doi.org/10.1039/c5mb00663e
- PMID: 26661513
- PMC: -
Download and documentation
Source: http://bioconductor.org/packages/release/bioc/src/contrib/ReactomePA_1.46.0.tar.gz
Documentation: http://bioconductor.org/packages/release/bioc/manuals/ReactomePA/man/ReactomePA.pdf
Home page: http://bioconductor.org/packages/release/bioc/html/ReactomePA.html
Links: http://bioconductor.org/packages/release/bioc/vignettes/ReactomePA/inst/doc/ReactomePA.html
Links: http://bioconductor.org/packages/release/bioc/vignettes/ReactomePA/inst/doc/ReactomePA.R
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