SANA

SANA (Simulated Annealing Network Aligner) is a tool for aligning networks of nodes and edges. It uses a simulated annealing technique to find the optimal alignment between two networks, considering the topology and node attributes. The tool can be used for various tasks such as protein-protein interaction network alignment, metabolic network alignment, and gene regulatory network alignment.

Topic

Data visualisation;Molecular interactions, pathways and networks;Simulation experiment

Detail

  • Operation: Pathway or network analysis

  • Software interface: Web user interface

  • Language: Shell, C++

  • License: -

  • Cost: Free

  • Version name: 1.2

  • Credit: Te National Natural Science Foundation of China (NSFC), JSPS-NSFC collaborative project, the Chief Scientist Program of Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences.

  • Input: -

  • Output: -

  • Contact: Wayne B. Hayes whayes@uci.edu

  • Collection: -

  • Maturity: -

Publications

  • SANA: an algorithm for sequential and non-sequential protein structure alignment.
  • Wang L, et al. SANA: an algorithm for sequential and non-sequential protein structure alignment. SANA: an algorithm for sequential and non-sequential protein structure alignment. 2010; 39:417-25. doi: 10.1007/s00726-009-0457-y
  • https://doi.org/10.1007/s00726-009-0457-y
  • PMID: 20127263
  • PMC: -

Download and documentation

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