SAPP

SAPP is a Semantic Annotation Platform with Provenance that enables the prediction, tracking, and storage of structural and functional annotations, as well as dataset- and element-wise provenance in a Linked Data format. SAPP is designed to support FAIR de novo computational genomics and facilitate large-scale comparative analysis.

Topic

Genomics;Computational biology;Omics

Detail

  • Operation: Coding region prediction;Query and retrieval;Genome annotation;Gene prediction;Sequence database search;Sequence conversion

  • Software interface: Command-line user interface

  • Language: Java

  • License: Apache-2.0

  • Cost: Free

  • Version name: -

  • Credit: The Research Council of Norway, the European Union FP7 and H2020, Synthetic Biology Investment Theme from Wageningen University.

  • Input: -

  • Output: -

  • Contact: jasper.koehorst@wur.nl

  • Collection: -

  • Maturity: -

Publications

  • SAPP: functional genome annotation and analysis through a semantic framework using FAIR principles.
  • Koehorst JJ, et al. SAPP: functional genome annotation and analysis through a semantic framework using FAIR principles. SAPP: functional genome annotation and analysis through a semantic framework using FAIR principles. 2018; 34:1401-1403. doi: 10.1093/bioinformatics/btx767
  • https://doi.org/10.1093/bioinformatics/btx767
  • PMID: 29186322
  • PMC: PMC5905645

Download and documentation

< Back to DB search