SCARF
The software tool SCARF is designed for the assembly of next-generation sequences for evolutionary genomics, particularly for 454 EST sequences against high-quality reference sequences from related species. It aims to assemble 454 contigs that do not assemble during traditional de novo assembly, using a reference sequence library to orient the 454 sequences.
Topic
Genomics
Detail
Operation: Sequence assembly
Software interface: Web user interface
Language: Perl
License: -
Cost: Free
Version name: -
Credit: National Science Foundation Plant Genome Award, Natural Sciences and Engineering Research Council of Canada.
Input: -
Output: -
Contact: Michael S. Barker msbarker@indiana.edu
Collection: -
Maturity: -
Publications
- SCARF: maximizing next-generation EST assemblies for evolutionary and population genomic analyses.
- Barker MS, et al. SCARF: maximizing next-generation EST assemblies for evolutionary and population genomic analyses. SCARF: maximizing next-generation EST assemblies for evolutionary and population genomic analyses. 2009; 25:535-6. doi: 10.1093/bioinformatics/btp011
- https://doi.org/10.1093/bioinformatics/btp011
- PMID: 19129211
- PMC: -
Download and documentation
Currently not available or not maintained.
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