SLiMSearch 4

SLiMSearch 4 (Short Linear Motifs Search) is a tool to discover and annotate functional modules. The SLiMSearch algorithm scans a motif consensus, that represents the specificity determinants of a binding domain to discover novel motifs and uses various complementary approaches to exploit the common properties.

Topic

Protein structural motifs and surfaces;Proteomics;Protein modifications

Detail

  • Operation: Sequence motif discovery;Sequence motif recognition;Enrichment analysis

  • Software interface: Web user user interface

  • Language: -

  • License: -

  • Cost: Free

  • Version name: -

  • Credit: Science Foundation Ireland.

  • Input: -

  • Output: -

  • Contact: norman.davey@ucd.ie

  • Collection: -

  • Maturity: -

Publications

  • SLiMSearch: a framework for proteome-wide discovery and annotation of functional modules in intrinsically disordered regions.
  • Krystkowiak I and Davey NE. SLiMSearch: a framework for proteome-wide discovery and annotation of functional modules in intrinsically disordered regions. SLiMSearch: a framework for proteome-wide discovery and annotation of functional modules in intrinsically disordered regions. 2017; 45:W464-W469. doi: 10.1093/nar/gkx238
  • https://doi.org/10.1093/NAR/GKX238
  • PMID: 28387819
  • PMC: PMC5570202

Download and documentation

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