SNPTEST

SNPTEST is a tool to analyze a single SNP association in genome-wide association studies (GWAS). The SNPTEST algorithm includes functions for case-control phenotypes, single and multiple quantitative phenotypes Bayesian, Frequentist tests, condition using an arbitrary set of covariates and/or SNPs, and several methods for imputed SNPs.

Topic

GWAS study

Detail

  • Operation: Mapping

  • Software interface: Command-line user interface

  • Language: Javascript;C++

  • License: Other

  • Cost: Free

  • Version name: v2.5.4-beta3, v2.5.2 (stable)

  • Credit: Medical Research Council, United Kingdom.

  • Input: -

  • Output: -

  • Contact: OXSTATGEN@JISCMAIL.AC.UK

  • Collection: -

  • Maturity: Stable

Publications

-

Download and documentation

< Back to DB search