SNaQ
SNaQ is a tool package to infer, manipulate, visualize, and interactively use phylogenetic networks. The SNaQ algorithm employs Maximum Pseudolikelihood (ML) method and bootstrap analysis and incorporates functions for summarising a set of networks.
Topic
Evolutionary biology;Phylogeny;Phylogenetics
Detail
Operation: Phylogenetic inference
Software interface: Command-line user interface
Language: Julia
License: MIT "Expat" License
Cost: Free
Version name: 0.15.1
Credit: National Science Foundation (NSF), Vilas Associate award from the University of Wisconsin-Madison, the Franco-American Fulbright Commission.
Input: eNewick
Output: eNewick
Contact: Claudia Solís-Lemus solislemus@wisc.edu
Collection: --
Maturity: -
Publications
- PhyloNetworks: A Package for Phylogenetic Networks.
- Solís-Lemus C, Bastide P, Ané C (2017). PhyloNetworks: A Package for Phylogenetic Networks. Mol Biol Evol 34(12): 3292-3298.
- https://doi.org/10.1093/molbev/msx235
- PMID: 28961984
- PMC: -
Download and documentation
Source: https://github.com/crsl4/PhyloNetworks.jl/releases/tag/v0.15.1
Documentation: https://crsl4.github.io/PhyloNetworks.jl/dev/
Home page: https://github.com/crsl4/PhyloNetworks.jl
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