ScreenBEAM

ScreenBEAM is a novel meta-analysis algorithm designed for functional genomics (FG) screens, which uses Bayesian hierarchical modeling to address the challenges of off-target effects, variable reagent potency, and experimental noise in high-throughput FG screens. It is particularly useful when combining multiple sh/sgRNAs targeting the same gene in the library. The algorithm is aimed at improving the accuracy and robustness of FG screens, and it provides a useful tool for analyzing the results of large-scale gene knockdown experiments.

Topic

RNAi experiment;Functional, regulatory and non-coding RNA;Genomics

Detail

  • Operation: Nucleic acid sequence analysis

  • Software interface: Library

  • Language: R

  • License: MIT licence

  • Cost: Free

  • Version name: 1.0.0

  • Credit: National Institutes of Health (NIH).

  • Input: -

  • Output: -

  • Contact: Jiyang Yu yujiyang@gmail.com, Andrea Califano ac2248@columbia.edu, Jose Silva jose.silva@mssm.edu

  • Collection: -

  • Maturity: -

Publications

  • ScreenBEAM: a novel meta-analysis algorithm for functional genomics screens via Bayesian hierarchical modeling.
  • Yu J, et al. ScreenBEAM: a novel meta-analysis algorithm for functional genomics screens via Bayesian hierarchical modeling. ScreenBEAM: a novel meta-analysis algorithm for functional genomics screens via Bayesian hierarchical modeling. 2016; 32:260-7. doi: 10.1093/bioinformatics/btv556
  • https://doi.org/10.1093/bioinformatics/btv556
  • PMID: 26415723
  • PMC: PMC4907394

Download and documentation


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