ScreenBEAM
ScreenBEAM is a novel meta-analysis algorithm designed for functional genomics (FG) screens, which uses Bayesian hierarchical modeling to address the challenges of off-target effects, variable reagent potency, and experimental noise in high-throughput FG screens. It is particularly useful when combining multiple sh/sgRNAs targeting the same gene in the library. The algorithm is aimed at improving the accuracy and robustness of FG screens, and it provides a useful tool for analyzing the results of large-scale gene knockdown experiments.
Topic
RNAi experiment;Functional, regulatory and non-coding RNA;Genomics
Detail
Operation: Nucleic acid sequence analysis
Software interface: Library
Language: R
License: MIT licence
Cost: Free
Version name: 1.0.0
Credit: National Institutes of Health (NIH).
Input: -
Output: -
Contact: Jiyang Yu yujiyang@gmail.com, Andrea Califano ac2248@columbia.edu, Jose Silva jose.silva@mssm.edu
Collection: -
Maturity: -
Publications
- ScreenBEAM: a novel meta-analysis algorithm for functional genomics screens via Bayesian hierarchical modeling.
- Yu J, et al. ScreenBEAM: a novel meta-analysis algorithm for functional genomics screens via Bayesian hierarchical modeling. ScreenBEAM: a novel meta-analysis algorithm for functional genomics screens via Bayesian hierarchical modeling. 2016; 32:260-7. doi: 10.1093/bioinformatics/btv556
- https://doi.org/10.1093/bioinformatics/btv556
- PMID: 26415723
- PMC: PMC4907394
Download and documentation
Documentation: https://github.com/jyyu/ScreenBEAM/tree/master/man
Home page: https://github.com/jyyu/ScreenBEAM
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