Sentieon DNASeq

Sentieon DNASeq is a software toolkit that provides an alternative to the Genome Analysis Toolkit (GATK) for variant calling in genome sequencing data. As genome sequencing becomes more common, efficient and accurate variant calling is crucial. Sentieon DNASeq aims to deliver faster variant calling while maintaining the same level of accuracy as GATK.

Topic

Sequencing;Workflows;Agricultural science

Detail

  • Operation: Variant calling

  • Software interface: Command-line user interface

  • Language: Shell

  • License: Not stated

  • Cost: Free of charge

  • Version name: -

  • Credit: Mayo Clinic Center for Individualized Medicine and the Todd and Karen Wanek Program for Hypoplastic Left Heart Syndrome.

  • Input: -

  • Output: -

  • Contact: Liudmila S. Mainzer lmainzer@illinois.edu

  • Collection: -

  • Maturity: -

Publications

  • Sentieon DNASeq Variant Calling Workflow Demonstrates Strong Computational Performance and Accuracy.
  • Kendig KI, et al. Sentieon DNASeq Variant Calling Workflow Demonstrates Strong Computational Performance and Accuracy. Sentieon DNASeq Variant Calling Workflow Demonstrates Strong Computational Performance and Accuracy. 2019; 10:736. doi: 10.3389/fgene.2019.00736
  • https://doi.org/10.3389/FGENE.2019.00736
  • PMID: 31481971
  • PMC: PMC6710408

Download and documentation

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