SeqArray

The 'SeqArray' software tool is for storing and analyzing whole-genome sequencing (WGS) variant data. It introduces a novel data format implemented in the R/Bioconductor package 'SeqArray' for storing variant calls in an array-oriented manner. This format offers similar capabilities to the widely used Variant Call Format (VCF) but with enhanced compression options and efficient data access using parallel computing.

Topic

Genomics;Genetic variation

Detail

  • Operation: Variant calling

  • Software interface: Command-line user interface,Library

  • Language: R

  • License: The GNU General Public License v3.0

  • Cost: Free

  • Version name: 1.42.0

  • Credit: NIH.

  • Input: -

  • Output: -

  • Contact: Xiuwen Zheng zhengx@u.washington.edu

  • Collection: -

  • Maturity: Stable

Publications

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Download and documentation

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