ShortRead
"ShortRead" is an R package for processing high-throughput sequencing data. It provides a suite of tools for the input, quality assessment, manipulation, and output of sequencing data, addressing the core needs of researchers working with next-generation sequencing technologies. It offers various functions for input, quality control, manipulation, and output of this type of data.
Topic
Sequencing
Detail
Operation: Loading;Sequence editing
Software interface: Command-line user interface,Library
Language: R
License: Artistic License 2.0
Cost: Free
Version name: 1.60.0
Credit: The National Human Genome Research Institute and the EU.
Input: -
Output: -
Contact: Bioconductor Package Maintainer maintainer@bioconductor.org
Collection: -
Maturity: Stable
Publications
- ShortRead: a bioconductor package for input, quality assessment and exploration of high-throughput sequence data.
- Morgan M, et al. ShortRead: a bioconductor package for input, quality assessment and exploration of high-throughput sequence data. ShortRead: a bioconductor package for input, quality assessment and exploration of high-throughput sequence data. 2009; 25:2607-8. doi: 10.1093/bioinformatics/btp450
- https://doi.org/10.1093/bioinformatics/btp450
- PMID: 19654119
- PMC: PMC2752612
Download and documentation
Source: https://bioconductor.org/packages/release/bioc/src/contrib/ShortRead_1.60.0.tar.gz
Documentation: https://bioconductor.org/packages/release/bioc/manuals/ShortRead/man/ShortRead.pdf
Home page: http://bioconductor.org/packages/release/bioc/html/ShortRead.html
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