SigTree

SigTree is an R tool package that contains a collection of functions for identifying and visualizing phylogenetic tree branches that show effective responses for operational taxonomic unit abundance in a microbial community. The SigTree functions take as inputs a phylogenetic tree of class phylo and corresponding tip (OTU) labels and p-values.

Topic

Phylogenetics;Data visualisation;Microbial ecology;Population genetics

Detail

  • Operation: Phylogenetic tree analysis

  • Software interface: Library

  • Language: R

  • License: GNU General Public License v3

  • Cost: Free

  • Version name: 1.10.6

  • Credit: -

  • Input: -

  • Output: -

  • Contact: John R. Stevens john.r.stevens@usu.edu

  • Collection: -

  • Maturity: Mature

Publications

  • SigTree: A Microbial Community Analysis Tool to Identify and Visualize Significantly Responsive Branches in a Phylogenetic Tree.
  • Stevens JR, Jones TR, Lefevre M, Ganesan B, Weimer BC. SigTree: A Microbial Community Analysis Tool to Identify and Visualize Significantly Responsive Branches in a Phylogenetic Tree. Comput Struct Biotechnol J. 2017 Jul 6;15:372-378. doi: 10.1016/j.csbj.2017.06.002. PMID: 28748045; PMCID: PMC5512180.
  • https://doi.org/10.1016/j.csbj.2017.06.002
  • PMID: 28748045
  • PMC: PMC5512180

Download and documentation

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