SmashCommunity

SmashCommunity is a metagenomic annotation and analysis pipeline that supports assembly and gene prediction for data from Sanger and 454 sequencing technologies. It provides tools to estimate the quantitative phylogenetic and functional compositions of metagenomes, compare compositions of multiple metagenomes, and produce visual representations of such analyses.

Topic

Metagenomics;Functional genomics;Sequence assembly;Microbial ecology

Detail

  • Operation: Prediction and recognition;Sequence assembly;Genome annotation

  • Software interface: Workflow

  • Language: -

  • License: Other

  • Cost: Free

  • Version name: 1.6

  • Credit: European Community's MetaHIT, FWO Oddyseus excellence programme

  • Input: -

  • Output: -

  • Contact: Peer Bork bork@embl.de

  • Collection: -

  • Maturity: Stable

Publications

  • SmashCommunity: a metagenomic annotation and analysis tool.
  • Arumugam M, et al. SmashCommunity: a metagenomic annotation and analysis tool. SmashCommunity: a metagenomic annotation and analysis tool. 2010; 26:2977-8. doi: 10.1093/bioinformatics/btq536
  • https://doi.org/10.1093/bioinformatics/btq536
  • PMID: 20959381
  • PMC: -

Download and documentation

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