SPAdes is a tool for assembling sequences from single-cell and multicell data types. It implements the following 4 stages: assembly graph construction, k-bimer adjustment, construction of paired assembly graph and contig construction. It is better than E+V-SC for assembling single-cell data and Velvet and SoapDeNovo for assembling multicell data.
Operation: Genome assembly;Sequence assembly
Software interface: Command-line user interface
Version name: 3.13.2
- SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.
- Bankevich A, et al. SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing. SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing. 2012; 19:455-77. doi: 10.1089/cmb.2012.0021
- PMID: 22506599
- PMC: PMC3342519
Download and documentation
Home page: http://cab.spbu.ru/software/spades/
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