SquamataBase

"SquamataBase" is an open-source R package and database, a collaborative effort focused on compiling predator-prey records specifically involving the world's snake species. This tool addresses a significant gap in the availability of natural history observations, which are crucial for broad-scale analyses in macroecology and macroevolution but remain scattered across the primary literature and relatively inaccessible for comparative studies.

Key Features and Functionalities:

- Vast Predator-Prey Records: SquamataBase contains a wealth of detailed observations, with at least 18,304 predator individuals spanning 1,227 snake species and records of at least 58,633 prey items covering 3,231 prey taxa. This extensive dataset provides a rich source of information for researchers studying predator-prey dynamics, diet, habitat, and other ecological and evolutionary aspects of snakes.

- User-Friendly Data Discovery: The package is designed with user convenience, making it a breeze for researchers to discover and use natural history observations. This feature significantly eases the integration of this data into comparative analyses and synthesis efforts.

- Integration with R for Analysis: By distributing the data within an R package, SquamataBase ensures seamless integration with comparative analysis workflows commonly used by researchers. The package includes basic data manipulation and filtering functionality, supporting various ecological and evolutionary research applications.

- Advancing Natural History Databases: The development of SquamataBase highlights the importance of creating and maintaining public natural history databases. It serves as a call to action for the continued development of similar resources and their integration with existing digitization efforts in biodiversity science.

Topic

Biodiversity;Taxonomy;Biological databases;Sample collections

Detail

  • Operation: Filtering;Aggregation;Query and retrieval

  • Software interface: Command-line interface

  • Language: R

  • License: CC0

  • Cost: Free with restrictions

  • Version name: sb_v1.0.0

  • Credit: -

  • Input: -

  • Output: -

  • Contact: Michael C. Grundler mgru@umich.edu

  • Collection: -

  • Maturity: Stable

Publications

  • SquamataBase: a natural history database and R package for comparative biology of snake feeding habits.
  • Grundler MC. SquamataBase: a natural history database and R package for comparative biology of snake feeding habits. SquamataBase: a natural history database and R package for comparative biology of snake feeding habits. 2020; 8:e49943. doi: 10.3897/BDJ.8.e49943
  • https://doi.org/10.3897/BDJ.8.E49943
  • PMID: 32269478
  • PMC: PMC7125237

Download and documentation


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