StereoGene

StereoGene is a method for rapidly estimating the genome-wide correlation between genomic features such as high-throughput data mapped to a reference genome or sets of genomic annotations. StereoGene can compute a correlation between continuous data without data binarization and data loss and accounts for potential confounders such as input DNA by partial correlation.

Topic

Sequencing;Genomics;Mapping

Detail

  • Operation: Genome feature comparison

  • Software interface: Command-line user interface

  • Language: C++

  • License: -

  • Cost: Free

  • Version name: v2.20

  • Credit: Russian Science Foundation, National Institutes of Health, Allegheny Health Network-Johns Hopkins Cancer Research Fund, JHU IDIES-Moore Foundation, Russian Foundation for Basic Research.

  • Input: -

  • Output: -

  • Contact: Elena Stavrovskaya stavrovskaya@gmail.com

  • Collection: -

  • Maturity: -

Publications

  • StereoGene: rapid estimation of genome-wide correlation of continuous or interval feature data.
  • Stavrovskaya ED, et al. StereoGene: rapid estimation of genome-wide correlation of continuous or interval feature data. StereoGene: rapid estimation of genome-wide correlation of continuous or interval feature data. 2017; 33:3158-3165. doi: 10.1093/bioinformatics/btx379
  • https://doi.org/10.1093/bioinformatics/btx379
  • PMID: 29028265
  • PMC: PMC5860031

Download and documentation

    Currently not available or not maintained.

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