SubVis

SubVis is an R library to compare results of multiple protein sequence alignments using amino acid substitution matrices that can be user defined or predefined. SubVis library uses alignment functions present in R and displays the alignment quality and individual amino acid substitutions. Thus, providing interactive visualizations for high- and low-level alignment information.

Topic

Sequence analysis;Protein sites, features and motifs;Structure analysis

Detail

  • Operation: Protein sequence analysis

  • Software interface: Library

  • Language: R

  • License: GNU General Public License v3

  • Cost: Free

  • Version name: 2.0.2

  • Credit: American Heart Association.

  • Input: -

  • Output: -

  • Contact: Scott Barlowe sabarlowe@email.wcu.edu

  • Collection: -

  • Maturity: -

Publications

  • SubVis: an interactive R package for exploring the effects of multiple substitution matrices on pairwise sequence alignment.
  • Barlowe S, Coan HB, Youker RT. SubVis: an interactive R package for exploring the effects of multiple substitution matrices on pairwise sequence alignment. PeerJ. 2017 Jun 27;5:e3492. doi: 10.7717/peerj.3492. PMID: 28674656; PMCID: PMC5490468.
  • https://doi.org/10.7717/peerj.3492
  • PMID: 28674656
  • PMC: PMC5490468

Download and documentation

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