SurreyFBA

SurreyFBA is a free, stand-alone software tool for constraint-based modeling of genome-scale metabolic networks. It provides basic simulation protocols, network map visualization, and the analysis of minimal substrate and product sets, which is not available in other commonly used programs. The tool is based on a command line interface to the GLPK solver and includes JyMet, a graphics user interface allowing spreadsheet-based model presentation and visualization of numerical results on metabolic networks represented in the Petri net convention.

Topic

Systems biology;Molecular interactions, pathways and networks;Genomics;Simulation experiment

Detail

  • Operation: Metabolic network modelling

  • Software interface: Graphical user interface

  • Language: C++

  • License: -

  • Cost: Free

  • Version name: -

  • Credit: BBSRC projects

  • Input: -

  • Output: -

  • Contact: h.wu@surrey.ac.uk

  • Collection: -

  • Maturity: -

Publications

  • SurreyFBA: a command line tool and graphics user interface for constraint-based modeling of genome-scale metabolic reaction networks.
  • Gevorgyan A, et al. SurreyFBA: a command line tool and graphics user interface for constraint-based modeling of genome-scale metabolic reaction networks. SurreyFBA: a command line tool and graphics user interface for constraint-based modeling of genome-scale metabolic reaction networks. 2011; 27:433-4. doi: 10.1093/bioinformatics/btq679
  • https://doi.org/10.1093/bioinformatics/btq679
  • PMID: 21148545
  • PMC: -

Download and documentation

    Currently not available or not maintained.

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