TESS
TESS is an R tool to estimate diversification rates and simulate reconstructed phylogenetic trees using tree-wide time-heterogeneous birth/death processes that include mass extinction events. The TESS algorithm includes functions for Maximum Likelihood (ML) estimation and Bayesian inference of rates for lineage diversification.
Topic
Phylogenetics;Simulation experiment;Genomics
Detail
Operation: Phylogenetic tree analysis;Modelling and simulation
Software interface: Library
Language: R
License: GNU General Public License v3
Cost: Free
Version name: 2.1.2
Credit: -
Input: -
Output: -
Contact: Sebastian Hoehna Sebastian.Hoehna@gmail.com
Collection: -
Maturity: -
Publications
- TESS: an R package for efficiently simulating phylogenetic trees and performing Bayesian inference of lineage diversification rates.
- Höhna S, May MR, Moore BR. TESS: an R package for efficiently simulating phylogenetic trees and performing Bayesian inference of lineage diversification rates. Bioinformatics. 2016 Mar 1;32(5):789-91. doi: 10.1093/bioinformatics/btv651. Epub 2015 Nov 4. PMID: 26543171.
- https://doi.org/10.1093/bioinformatics/btv651
- PMID: 26543171
- PMC: -
Download and documentation
Source: https://cran.r-project.org/src/contrib/TESS_2.1.2.tar.gz
Documentation: https://cran.r-project.org/web/packages/TESS/TESS.pdf
Home page: http://cran.r-project.org/web/packages/TESS/
Links: https://cran.r-project.org/web/packages/TESS/vignettes/Bayesian_Diversification_Rate_Analysis.pdf
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