TRAL

TRAL is a tandem repeat annotation library that offers a variety of functions for detecting, clustering, and filtering false-positive annotations of tandem repeats. It provides a tandem repeat annotation and refinement module based on circular profile hidden Markov models (cpHMMs), and it can evaluate the performance of multi-step tandem repeat annotation workflows.

Topic

Proteins;Sequence composition, complexity and repeats;Sequence analysis

Detail

Operation: Sequence annotation
Software interface: Library
Language: Python
License: GNU General Public License v2.0
Cost: Free
Version name: 2.0.0
Credit: ZHAW Anschubfinanzierung, the SIB Swiss Institute of Bioinformatics is supported by the Swiss State Secretariat for Education, Research, and Innovation.
Input: -
Output: -
Contact: elke.schaper@isb-sib.ch
Collection: -
Maturity: Stable

Publications

TRAL: tandem repeat annotation library.
Schaper E, et al. TRAL: tandem repeat annotation library. TRAL: tandem repeat annotation library. 2015; 31:3051-3. doi: 10.1093/bioinformatics/btv306
https://doi.org/10.1093/bioinformatics/btv306
PMID: 25987568
PMC: -

Download and documentation

Source: https://github.com/acg-team/tral/tags
Documentation: https://github.com/acg-team/tral/tree/develop/docs
Home page: https://github.com/acg-team/tral

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