Tbl2KnownGene

Tbl2KnownGene is a software tool that can convert a NCBI .tbl file into a UCSC Known Genes annotation feature table. The tool is useful for organisms whose sequence and annotation data tables, including "knownGene.txt", have not yet been made available to the public. The software is tested with chromosome datasets from Arabidopsis genome (TAIR10) and Perl scripts and required input files are available on the web.

Topic

Literature and language;Genetics;Sequence analysis

Detail

  • Operation: Formatting

  • Software interface: Command-line user interface

  • Language: Perl

  • License: -

  • Cost: Free

  • Version name: -

  • Credit: -

  • Input: -

  • Output: -

  • Contact: Yongsheng.Bai@indstate.edu

  • Collection: -

  • Maturity: -

Publications

  • Tbl2KnownGene: A command-line program to convert NCBI.tbl to UCSC knownGene.txt data file.
  • Bai Y. Tbl2KnownGene: A command-line program to convert NCBI.tbl to UCSC knownGene.txt data file. Tbl2KnownGene: A command-line program to convert NCBI.tbl to UCSC knownGene.txt data file. 2014; 10:544-7. doi: 10.6026/97320630010544
  • https://doi.org/10.6026/97320630010544
  • PMID: 25258492
  • PMC: PMC4166776

Download and documentation

    Currently not available or not maintained.

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