TimeClust

TimeClust is a software package for clustering genes based on their temporal expression profiles in DNA microarray time-course experiments. It includes two algorithms designed for clustering short time series, as well as hierarchical clustering and self-organizing maps.

Topic

Software engineering;Gene expression;DNA

Detail

  • Operation: Clustering

  • Software interface: Command-line user interface

  • Language: MATLAB

  • License: Not stated

  • Cost: Free

  • Version name: 1.3

  • Credit: Italian “Ministero dell'Università e della Ricerca”, FIRB-ITALBIONET projects, investigator Fellowship from Collegio Ghislieri, Pavia, Italy.

  • Input: -

  • Output: -

  • Contact: Paolo Magni paolo.magni@unipv.it

  • Collection: -

  • Maturity: -

Publications

  • TimeClust: a clustering tool for gene expression time series.
  • Magni P, et al. TimeClust: a clustering tool for gene expression time series. TimeClust: a clustering tool for gene expression time series. 2008; 24:430-2. doi: 10.1093/bioinformatics/btm605
  • https://doi.org/10.1093/bioinformatics/btm605
  • PMID: 18065427
  • PMC: -

Download and documentation

< Back to DB search