UMI-tools
UMI-tools is a software package to manage Unique Molecular Identifiers (UMIs). UMI-tools account for sequencing errors in UMIs for improved accuracy.
Topic
NGS;Sequence sites, features and motifs;Quality affairs
Detail
Operation: Sequencing quality control
Software interface: Command-line user interface
Language: Shell;Python
License: The MIT licence
Cost: Free
Version name: 1.1.2
Credit: Medical Research Council (MRC) programme grant.
Input: -
Output: -
Contact: Ian Sudbery i.sudbery@sheffield.ac.uk
Collection: -
Maturity: Stable
Publications
- UMI-tools: modeling sequencing errors in Unique Molecular Identifiers to improve quantification accuracy.
- Smith T, Heger A, Sudbery I. UMI-tools: modeling sequencing errors in Unique Molecular Identifiers to improve quantification accuracy. Genome Res. 2017 Mar;27(3):491-499. doi: 10.1101/gr.209601.116. Epub 2017 Jan 18. PMID: 28100584; PMCID: PMC5340976.
- https://doi.org/10.1101/gr.209601.116
- PMID: 28100584
- PMC: PMC5340976
Download and documentation
Documentation: https://umi-tools.readthedocs.io/en/latest/
Home page: https://github.com/CGATOxford/UMI-tools
Links: https://github.com/CGATOxford/UMI-tools/blob/master/doc/QUICK_START.md
Links: https://github.com/CGATOxford/UMI-tools/blob/master/doc/Single_cell_tutorial.md
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