VISMapper

VISMapper (Viral Integration Sites Mapper) is a web portal for analyzing retroviral vector integration sites in next-generation sequencing data. The VISMapper algorithm uses novel mapping algorithms.

Topic

Medicine;Mapping;Virology;Data visualisation

Detail

  • Operation: Sequence visualisation

  • Software interface: Web user interface

  • Language: -

  • License: -

  • Cost: Free

  • Version name: -

  • Credit: The Spanish Ministry of Economy and Competitiveness (MINECO), Plataforma de Recursos Biomoleculares y Bioinformáticos, European Regional Development Funds.

  • Input: FASTA, FASTQ, zip

  • Output: -

  • Contact: Joaquín Dopazo joaquin.dopazo@juntadeandalucia.es, joaquin.dopazo@gmail.com

  • Collection: -

  • Maturity: -

Publications

  • VISMapper: ultra-fast exhaustive cartography of viral insertion sites for gene therapy.
  • Juanes JM, Gallego A, Tárraga J, Chaves FJ, Marín-Garcia P, Medina I, Arnau V, Dopazo J. VISMapper: ultra-fast exhaustive cartography of viral insertion sites for gene therapy. BMC Bioinformatics. 2017 Sep 20;18(1):421. doi: 10.1186/s12859-017-1837-z. PMID: 28931371; PMCID: PMC5607581.
  • https://doi.org/10.1186/s12859-017-1837-z
  • PMID: 28931371
  • PMC: PMC5607581

Download and documentation

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