Vermont

Vermont (ViewER MutatiON Tool) is a web portal to analyze the impact of point mutations in proteins. The Vermont algorithm integrates intramolecular interactions, solvent accessibility, and topological properties.

Topic

DNA mutation;Molecular interactions, pathways and networks;Protein structure analysis;Protein interactions

Detail

  • Operation: Sequence visualisation;Pathway or network visualisation

  • Software interface: Command-line user interface

  • Language: -

  • License: -

  • Cost: Free

  • Version name: 2.0

  • Credit: Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES), Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq) and Fundação de Amparo à Pesquisa do Estado de Minas Gerais (FAPEMIG).

  • Input: FASTA

  • Output: -

  • Contact: Alexandre V Fassio alexandrefassio@dcc.ufmg.br

  • Collection: -

  • Maturity: -

Publications

  • VERMONT: Visualizing mutations and their effects on protein physicochemical and topological property conservation
  • Silveira SA, Fassio AV, Gonçalves-Almeida VM, et. al. VERMONT: Visualizing mutations and their effects on protein physicochemical and topological property conservation. BMC Proc. 2014 Aug 28;8(Suppl 2 Proceedings of the 3rd Annual Symposium on Biologica):S4. doi: 10.1186/1753-6561-8-S2-S4. PMID: 25237391; PMCID: PMC4155615.
  • https://doi.org/10.1186/1753-6561-8-S2-S4
  • PMID: 25237391
  • PMC: PMC4155615
  • Vermont: a multi-perspective visual interactive platform for mutational analysis.
  • Fassio AV, Martins PM, Guimarães SDS, Junior SSA, Ribeiro VS, de Melo-Minardi RC, Silveira SA. Vermont: a multi-perspective visual interactive platform for mutational analysis. BMC Bioinformatics. 2017 Sep 13;18(Suppl 10):403. doi: 10.1186/s12859-017-1789-3. PMID: 28929973; PMCID: PMC5606220.
  • https://doi.org/10.1186/s12859-017-1789-3
  • PMID: 28929973
  • PMC: PMC5606220

Download and documentation

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