ViTraM

ViTraM is a software tool designed to visualize overlapping transcriptional modules in an intuitive way, allowing for better biological analysis and interpretation of the output of module detection tools. ViTraM not only visualizes the co-expressed genes and experiments, but also displays additional properties such as the regulators and regulatory motifs responsible for the observed co-expression. The tool is platform-independent and freely available.

Topic

Gene expression

Detail

  • Operation: Pathway or network visualisation

  • Software interface: Command-line user interface

  • Language: Java

  • License: Other

  • Cost: Free for ACADEMIC USE ONLY

  • Version name: 2.0

  • Credit: GOA AMBioRICS, CoE EF/05/007, SymBioSys; CREA/08/023; SBO-BioFrame; IUAP P6/25 (BioMaGNet); FWO IOK-B9725-G.0329.09; ZKB8933/CREA/08/023/ BOF.

  • Input: -

  • Output: -

  • Contact: kathleen.marchal@intec.ugent.be

  • Collection: -

  • Maturity: -

Publications

  • ViTraM: visualization of transcriptional modules.
  • Sun H, et al. ViTraM: visualization of transcriptional modules. ViTraM: visualization of transcriptional modules. 2009; 25:2450-1. doi: 10.1093/bioinformatics/btp400
  • https://doi.org/10.1093/bioinformatics/btp400
  • PMID: 19587224
  • PMC: -

Download and documentation

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