Wiggler
Wiggler is a tool to make normalized genome-wide signal coverage tracks based on alignment files in ENCODE datasets.
Topic
Sequence analysis;ChIP-seq
Detail
Operation: Standardisation and normalisation
Software interface: Command-line user interface
Language: MATLAB
License: The MIT licence
Cost: Free
Version name: -
Credit: National Institutes of Health, National Science Foundation, National Human Genome Research Institute.
Input: -
Output: -
Contact: william-noble@uw.edu, manoli@mit.edu
Collection: -
Maturity: Stable
Publications
- An integrated encyclopedia of DNA elements in the human genome
- ENCODE Project Consortium. “An integrated encyclopedia of DNA elements in the human genome.” Nature vol. 489,7414 (2012): 57-74.
- https://doi.org/10.1038/nature11247
- PMID: 22955616
- PMC: PMC3439153
- Integrative annotation of chromatin elements from ENCODE data.
- Hoffman, Michael M et al. “Integrative annotation of chromatin elements from ENCODE data.” Nucleic acids research vol. 41,2 (2013): 827-41.
- https://doi.org/10.1093/nar/gks1284
- PMID: 23221638
- PMC: PMC3553955
Download and documentation
Documentation: https://sites.google.com/site/anshulkundaje/projects/wiggler
Home page: https://sites.google.com/site/anshulkundaje/projects/wiggler
Data: http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/encodeDCC/
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