Wigwams

Wigwams is a tool to analyze expression patterns in time series in given conditions and test dependencies as signatures of co-expression regulatory mechanisms.

Topic

Gene expression;Gene regulation

Detail

  • Operation: Query and retrieval

  • Software interface: Graphical user interface

  • Language: MATLAB

  • License: Not stated

  • Cost: Free

  • Version name: -

  • Credit: The Engineering and Physical Sciences Research Council (EPSRC)-Biotechnology, Biological Sciences Research Council (BBSRC), BBSRC Systems Approaches to Biological Research studentship.

  • Input: Gene Expression CSV

  • Output: exported_modules.tsv

  • Contact: comp-sci@dcs.warwick.ac.uk, k.j.denby@warwick.ac.uk

  • Collection: -

  • Maturity: -

Publications

  • Wigwams: identifying gene modules co-regulated across multiple biological conditions.
  • Polanski K, Rhodes J, Hill C, Zhang P, Jenkins DJ, Kiddle SJ, Jironkin A, Beynon J, Buchanan-Wollaston V, Ott S, Denby KJ. Wigwams: identifying gene modules co-regulated across multiple biological conditions. Bioinformatics. 2014 Apr 1;30(7):962-70.
  • https://doi.org/10.1093/bioinformatics/btt728
  • PMID: 24351708
  • PMC: PMC3967106

Download and documentation

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