X-MATE

SUMMARY: Accurate and complete mapping of short-read sequencing to a reference
genome greatly enhances the discovery of biological results and improves
statistical predictions. We recently presented RNA-MATE, a pipeline for the
recursive mapping of RNA-Seq datasets. With the rapid increase in genome
re-sequencing projects, progression of available mapping software and the
evolution of file formats, we now present X-MATE, an updated version of RNA-MATE,
capable of mapping both RNA-Seq and DNA datasets and with improved performance,
output file formats, configuration files, and flexibility in core mapping
software. AVAILABILITY: Executables, source code, junction libraries, test data
and results and the user manual are available from
http://grimmond.imb.uq.edu.au/X-MATE/.

X-MATE: a flexible system for mapping short read data.

X-MATE is a pipeline for the mapping of both RNA-Seq and DNA datasets, which has improved performance, output file formats, configuration files, and flexibility in core mapping software compared to its predecessor, RNA-MATE. The tool is designed for accurate and complete mapping of short-read sequencing to a reference genome, which improves the discovery of biological results and statistical predictions.

X-MATE

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