XLmap

XLmap is a software tool implemented in R that utilizes spatial information derived from cross-linked residues to assist with structural modeling of proteins. It compares site interactions resulting from XL-MS with protein structure contact maps to help select structural models.

Topic

Molecular modelling;Protein structure analysis;Structural biology

Detail

  • Operation: Protein structure analysis

  • Software interface: Library

  • Language: R

  • License: Apache License 2.0

  • Cost: Free

  • Version name: 0.2.1

  • Credit: National Institutes of Health.

  • Input: -

  • Output: -

  • Contact: dkschwep@uw.edu

  • Collection: -

  • Maturity: -

Publications

  • XLmap: an R package to visualize and score protein structure models based on sites of protein cross-linking.
  • Schweppe DK, et al. XLmap: an R package to visualize and score protein structure models based on sites of protein cross-linking. XLmap: an R package to visualize and score protein structure models based on sites of protein cross-linking. 2016; 32:306-8. doi: 10.1093/bioinformatics/btv519
  • https://doi.org/10.1093/bioinformatics/btv519
  • PMID: 26411867
  • PMC: PMC5013974

Download and documentation

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