agplus

The tool 'agplus' is a command-line tool for ChIP-Seq data analysis that generates text tables used to evaluate signal distributions at user-defined points in aggregation plots. It enables users to create multiple groups based on their own definitions such as regulatory regions or transcription initiation sites. The tool is implemented in Ruby, supported on Linux and Mac OSX.

Topic

Transcription factors and regulatory sites;Gene regulation

Detail

  • Operation: Visualisation;Aggregation

  • Software interface: Command-line user interface

  • Language: Shell;Ruby

  • License: -

  • Cost: Free

  • Version name: v1.0

  • Credit: The Research Institute for Information Technology, Kyushu University (tatara) and the National Institute of Genetics (NIG)

  • Input: -

  • Output: -

  • Contact: Yasuyuki Ohkawa yohkawa@epigenetics.med.kyushu-u.ac.jp

  • Collection: -

  • Maturity: -

Publications

  • agplus: a rapid and flexible tool for aggregation plots.
  • Maehara K and Ohkawa Y. agplus: a rapid and flexible tool for aggregation plots. agplus: a rapid and flexible tool for aggregation plots. 2015; 31:3046-7. doi: 10.1093/bioinformatics/btv322
  • https://doi.org/10.1093/bioinformatics/btv322
  • PMID: 25995229
  • PMC: -

Download and documentation

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