aroma.light
"aroma.light" is a comprehensive R package developed to address and correct global biases in two-channel microarray data, often observed as non-linearities or intensity-dependent log ratios in gene expression analyses. These biases can significantly affect the accuracy of microarray experiments and are introduced at various stages, including the microarray scanning process and image analysis.
Topic
Microarray experiment;Gene expression;Genetics
Detail
Operation: Gene expression analysis
Software interface: Command-line user interface,Library
Language: R
License: GNU General Public License, version 2
Cost: Free
Version name: 3.32.0
Credit: The Swedish Foundation for International Cooperation in Research and Higher Education (STINT), Fulbright Commission, Foundation Blanceflor Boncompagni-Ludovisi née Bildt, Royal Swedish Academy of Sciences, Royal Physiographic Society in Lund, Swedish Cancer Society, Ingabritt and Arne Lundberg's Research Foundation, and American Cancer Society, the Knut and Alice Wallenberg foundation through the SWEGENE consortium.
Input: -
Output: -
Contact: Henrik Bengtsson henrikb@braju.com
Collection: -
Maturity: Stable
Publications
- Calibration and assessment of channel-specific biases in microarray data with extended dynamical range.
- Bengtsson H, et al. Calibration and assessment of channel-specific biases in microarray data with extended dynamical range. Calibration and assessment of channel-specific biases in microarray data with extended dynamical range. 2004; 5:177. doi: 10.1186/1471-2105-5-177
- https://doi.org/10.1186/1471-2105-5-177
- PMID: 15541170
- PMC: PMC539274
Download and documentation
Source: https://bioconductor.org/packages/release/bioc/src/contrib/aroma.light_3.32.0.tar.gz
Documentation: https://bioconductor.org/packages/release/bioc/manuals/aroma.light/man/aroma.light.pdf
Home page: http://bioconductor.org/packages/release/bioc/html/aroma.light.html
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