dbCAN-seq

The dbCAN-seq database has been updated to include data and features essential for microbial communities to survive in carbohydrate-rich environments. This consists of ∼498,000 CAZymes, ∼169,000 CAZyme gene clusters, and predicted glycan substrates for 41,447 CGCs. The database also includes a redesigned CGC page, a statistics page, and a batch download page. This updated dbCAN-seq database provides users with the tools needed to understand carbohydrates' role in microbial communities better.

Topic

Microbial ecology;Carbohydrates;Metagenomics;Agricultural science;Sequence assembly

Detail

  • Operation: Sequence assembly;Database search;Clustering

  • Software interface: Database, Web user interface

  • Language: -

  • License: Other

  • Cost: Free

  • Version name: -

  • Credit: Nebraska Research Initiative.

  • Input: -

  • Output: -

  • Contact: Yanbin Yin yyin@unl.edu

  • Collection: -

  • Maturity: -

Publications

  • dbCAN-seq update: CAZyme gene clusters and substrates in microbiomes.
  • Zheng J, et al. dbCAN-seq update: CAZyme gene clusters and substrates in microbiomes. dbCAN-seq update: CAZyme gene clusters and substrates in microbiomes. 2023; 51:D557-D563. doi: 10.1093/nar/gkac1068
  • https://doi.org/10.1093/NAR/GKAC1068
  • PMID: 36399503
  • PMC: PMC9825555

Download and documentation

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