derfinderPlot
The software tool "derfinderPlot" is part of the "derfinder" suite, enhancing annotation-agnostic RNA-seq analysis through a differentially expressed region (DER) finder. "derfinder" uses a bump-hunting approach to identify contiguous genomic regions with differential expression signals at single-base resolution. "derfinderPlot" complements this analysis by providing a set of data visualizations for expressed region analysis. It facilitates the exploration and interpretation of the identified DERs, allowing users to visualize and gain insights into differential expression patterns at base resolution.
Topic
Data visualisation
Detail
Operation: Visualisation
Software interface: Command-line user interface,Library
Language: R
License: Artistic License 2.0
Cost: Free
Version name: 1.36.0
Credit: NIH, Consejo Nacional de Ciencia y Tecnología México.
Input: Annotation track [Sequence annotation track format]
Output: Plot [Image format]
Contact: Leonardo Collado-Torres lcolladotor@gmail.com
Collection: -
Maturity: Stable
Publications
-
Download and documentation
Source: http://bioconductor.org/packages/release/bioc/src/contrib/derfinderPlot_1.36.0.tar.gz
Documentation: http://bioconductor.org/packages/release/bioc/manuals/derfinderPlot/man/derfinderPlot.pdf
Home page: http://bioconductor.org/packages/release/bioc/html/derfinderPlot.html
Links: http://bioconductor.org/packages/release/bioc/vignettes/derfinderPlot/inst/doc/derfinderPlot.html
Links: http://bioconductor.org/packages/release/bioc/vignettes/derfinderPlot/inst/doc/derfinderPlot.R
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