dittoSeq

"dittoSeq" is a comprehensive visualization suite for various types of bulk and single-cell RNAseq data, offering functionalities in the R programming environment. Features include color blindness-friendly default settings, robust documentation for user-friendly operation, and extensive customization options for generating routine and publication-quality figures.

Topic

RNA-Seq;RNA;Transcriptomics;Imaging

Detail

  • Operation: Visualisation;Essential dynamics;Dimensionality reduction

  • Software interface: Library

  • Language: R

  • License: The MIT License

  • Cost: Free

  • Version name: 1.14.0

  • Credit: The National Institutes of Health, the Burroughs Wellcome Fund, and PREMIER, a National Institutes of Health / National Institute of Arthritis and Musculoskeletal and Skin Diseases (NIH/NIAMS) P30 Center for the Advancement of Precision Medicine in Rheumatology at UCSF.

  • Input: -

  • Output: -

  • Contact: Daniel Bunis daniel.bunis@ucsf.edu

  • Collection: -

  • Maturity: Stable

Publications

  • dittoSeq: universal user-friendly single-cell and bulk RNA sequencing visualization toolkit.
  • Bunis DG, et al. dittoSeq: universal user-friendly single-cell and bulk RNA sequencing visualization toolkit. dittoSeq: universal user-friendly single-cell and bulk RNA sequencing visualization toolkit. 2021; 36:5535-5536. doi: 10.1093/bioinformatics/btaa1011
  • https://doi.org/10.1093/BIOINFORMATICS/BTAA1011
  • PMID: 33313640
  • PMC: PMC8016464

Download and documentation

< Back to DB search