dnaMATE

dnaMATE is a tool to calculate consensus melting and annealing temperatures for short DNA sequences of 16 to 30 nucleotides of length. The dnaMATE uses three independent thermodynamic data tables for the calculations, gives five separate approximations, a consensus temperature, and an expected melting temperature variation estimate. A stand-alone version is available.

Topic

Nucleic acid structure analysis;DNA

Detail

  • Operation: Nucleic acid thermodynamic property calculation

  • Software interface: Web user interface

  • Language: Java

  • License: -

  • Cost: Free

  • Version name: -

  • Credit: Fundación Andes, FONDECYT, DIPUC

  • Input: -

  • Output: -

  • Contact: fmelo@bio.puc.cl

  • Collection: -

  • Maturity: -

Publications

  • Comparison of different melting temperature calculation methods for short DNA sequences.
  • Panjkovich A, Melo F (2005). Comparison of different melting temperature calculation methods for short DNA sequences. Bioinformatics 21(6): 711-22.
  • https://doi.org/10.1093/bioinformatics/bti066
  • PMID: 15501913
  • PMC: None
  • dnaMATE: a consensus melting temperature prediction server for short DNA sequences.
  • Panjkovich A, et al. dnaMATE: a consensus melting temperature prediction server for short DNA sequences. dnaMATE: a consensus melting temperature prediction server for short DNA sequences. 2005; 33:W570-2. doi: 10.1093/nar/gki379
  • https://doi.org/10.1093/nar/gki379
  • PMID: 15980538
  • PMC: PMC1160140

Download and documentation

< Back to DB search