ePlant

ePlant is a web-based to visualize connections between DNA sequences, i.e., polymorphisms, molecular structures, protein-protein interactions, and gene expression patterns. The ePlant algorithm includes (1) sequence conservation explorer with homology relationships and single nucleotide polymorphism data, (2) a protein structure model explorer, (3) a molecular interaction network explorer, (4) a gene product subcellular localization explorer, (5) a gene expression pattern explorer, (6) publication viewer, (7) heatmap viewer, (8) world eFP viewer, (9) plant eFP viewer, (10) tissue and experiment eFP viewers, (11) cell eFP viewer, (12) chromosome viewer, (13) pathways viewer, (14) molecule viewer.

Topic

Molecular interactions, pathways and networks;Model organisms;Genetic variation;Protein interactions;DNA polymorphism

Detail

  • Operation: Protein modelling;Protein interaction network analysis;Protein structure prediction;SNP detection;Pathway or network prediction

  • Software interface: Database portal

  • Language: Javascript

  • License: CC-BY-2.5

  • Cost: Free

  • Version name: -

  • Credit: NSERC Discovery Grant, the Ontario Genomics Institute Genomics Publication Fund.

  • Input: -

  • Output: -

  • Contact: jamie.waese@mail.utoronto.ca

  • Collection: -

  • Maturity: -

Publications

  • ePlant and the 3D data display initiative: integrative systems biology on the world wide web.
  • Fucile G, Di Biase D, Nahal H, La G, Khodabandeh S, Chen Y, Easley K, Christendat D, Kelley L, Provart NJ. ePlant and the 3D data display initiative: integrative systems biology on the world wide web. PLoS One. 2011 Jan 10;6(1):e15237.
  • https://doi.org/10.1371/journal.pone.0015237
  • PMID: 21249219
  • PMC: PMC3018417

Download and documentation

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