eTumorMetastasis
eTumorMetastasis represents a breakthrough in applying genome sequencing data for clinical purposes, particularly in cancer treatment and management. This innovative algorithm tackles a critical challenge in modern oncology: the transition from abundant genomic data to actionable clinical insights. As sequencing costs continue to drop, the availability of genome sequencing data for routine clinical applications has expanded dramatically. However, the bottleneck has been the development of effective machine learning-based models that can utilize this data to predict clinical outcomes, such as tumor recurrence.
eTumorMetastasis addresses this gap by leveraging tumor functional mutations and transforming them into network-based profiles. These profiles are then used to identify Network Operational Gene (NOG) signatures. NOG signatures are pivotal as they model the critical tipping point at which a tumor cell transitions from a state that does not favor recurrence to one that does. This approach is groundbreaking in its ability to predict tumor behavior based on the genetic makeup of tumor founding clones, or the "most recent common ancestor" of the cells within a tumor.
The implications of eTumorMetastasis extend beyond breast cancer, offering a promising avenue for applying genome sequencing data to predict outcomes for other complex genetic diseases. ETumorMetastasis paves the way for a more personalized and effective approach to cancer treatment by providing a method to transform raw genomic mutations into clinically relevant predictive models.
Topic
Oncology;Exome sequencing;Machine learning;Genetic variation;Systems biology
Detail
Operation: Prediction and recognition
Software interface: Library,Script
Language: R
License: Not stated
Cost: Free of charge
Version name: -
Credit: The National Research Council of Canada, the Alberta Innovates Translational Chair Program in Cancer Genomics, the Natural Sciences and Engineering Research Council of Canada, and the Canada Foundation for Innovation.
Input: -
Output: -
Contact: Edwin Wang edwin.wang@ucalgary.ca
Collection: -
Maturity: -
Publications
- eTumorMetastasis: A Network-based Algorithm Predicts Clinical Outcomes Using Whole-exome Sequencing Data of Cancer Patients.
- Milanese JS, et al. eTumorMetastasis: A Network-based Algorithm Predicts Clinical Outcomes Using Whole-exome Sequencing Data of Cancer Patients. eTumorMetastasis: A Network-based Algorithm Predicts Clinical Outcomes Using Whole-exome Sequencing Data of Cancer Patients. 2021; 19:973-985. doi: 10.1016/j.gpb.2020.06.009
- https://doi.org/10.1016/J.GPB.2020.06.009
- PMID: 33581336
- PMC: PMC9402585
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