eXamine
eXamine is a Cytoscape app to visualize and annotate networks. eXamine computes sets and displays set memberships as contours
Topic
Molecular interactions, pathways and networks
Detail
Operation: Pathway or network analysis;Visualisation;Gene functional annotation;Pathway or network visualisation
Software interface: Command-line user interface;Library;plug-in
Language: Java
License: GNU General Public License v2
Cost: Free
Version name: -
Credit: -
Input: -
Output: -
Contact: Mohammed El-Kebir m.elkebir@gmail.com
Collection: -
Maturity: -
Publications
- eXamine: exploring annotated modules in networks
- Dinkla K, El-Kebir M, Bucur CI, Siderius M, Smit MJ, Westenberg MA, Klau GW. eXamine: exploring annotated modules in networks. BMC Bioinformatics. 2014 Jul 10;15:201. doi: 10.1186/1471-2105-15-201. PMID: 25002203; PMCID: PMC4084410.
- https://doi.org/10.1186/1471-2105-15-201
- PMID: 25002203
- PMC: PMC4084410
- eXamine: Visualizing annotated networks in Cytoscape.
- Spohr P, Dinkla K, Klau GW, El-Kebir M. eXamine: Visualizing annotated networks in Cytoscape. F1000Res. 2018 Apr 30;7:519. doi: 10.12688/f1000research.14612.2. PMID: 29983924; PMCID: PMC6013758.
- https://doi.org/10.12688/f1000research.14612.2
- PMID: 29983924
- PMC: PMC6013758.2
Download and documentation
Documentation: https://github.com/ls-cwi/eXamine/blob/master/README.md
Home page: https://github.com/ls-cwi/eXamine
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