esATAC

'esATAC' is an R/Bioconductor package that facilitates systematic ATAC-seq data analysis, covering essential steps such as raw data processing, quality control, peak calling, enrichment analysis, and transcription factor footprinting. It supports one command line execution for preset pipelines and provides flexible interfaces for building customized pipelines.

Topic

Genomics;Epigenetics;ChIP-seq

Detail

  • Operation: Sequence analysis

  • Software interface: Library

  • Language: R;C++

  • License: GNU General Public License v3

  • Cost: Free

  • Version name: 1.20.0

  • Credit: The National Science Foundation of China, Tsinghua University Initiative Scientific Research Program, the Open Research Fund of State Key Laboratory of Bioelectronics, Southeast University.

  • Input: -

  • Output: -

  • Contact: Zheng Wei wzweizheng@qq.com, w-zhang16@mails.tsinghua.edu.cn

  • Collection: -

  • Maturity: Stable

Publications

  • esATAC: an easy-to-use systematic pipeline for ATAC-seq data analysis.
  • Wei Z, et al. esATAC: an easy-to-use systematic pipeline for ATAC-seq data analysis. esATAC: an easy-to-use systematic pipeline for ATAC-seq data analysis. 2018; 34:2664-2665. doi: 10.1093/bioinformatics/bty141
  • https://doi.org/10.1093/bioinformatics/bty141
  • PMID: 29522192
  • PMC: PMC6061683

Download and documentation

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