fastbaps

fastbaps is an R tool to analyze population structure. The fastbaps algorithm uses the Dirichlet Process Mixture model (DPM) to cluster multi-locus genotype data.

Topic

Genotype and phenotype;Phylogenetics;Mapping

Detail

  • Operation: Essential dynamics;Clustering;Genotyping

  • Software interface: Library

  • Language: R, C++, C

  • License: The MIT License + file LICENSE

  • Cost: Free

  • Version name: 1.0.6

  • Credit: Wellcome Trust, ERC, The Alan Turing Institute via an Engineering and Physical Sciences Research Council, U.S. National Institutes of Health.

  • Input: FASTA

  • Output: -

  • Contact: Gerry Tonkin-Hill gqt20@cam.ac.uk, g.tonkinhill@gmail.com

  • Collection: -

  • Maturity: Stable

Publications

  • Fast hierarchical Bayesian analysis of population structure.
  • Tonkin-Hill G, Lees JA, Bentley SD, Frost SDW, Corander J (2019). Fast hierarchical Bayesian analysis of population structure. Nucleic Acids Res 47(11): 5539-5549.
  • https://doi.org/10.1093/nar/gkz361
  • PMID: 31076776
  • PMC: PMC6582336

Download and documentation

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