fastbaps
fastbaps is an R tool to analyze population structure. The fastbaps algorithm uses the Dirichlet Process Mixture model (DPM) to cluster multi-locus genotype data.
Topic
Genotype and phenotype;Phylogenetics;Mapping
Detail
Operation: Essential dynamics;Clustering;Genotyping
Software interface: Library
Language: R, C++, C
License: The MIT License + file LICENSE
Cost: Free
Version name: 1.0.6
Credit: Wellcome Trust, ERC, The Alan Turing Institute via an Engineering and Physical Sciences Research Council, U.S. National Institutes of Health.
Input: FASTA
Output: -
Contact: Gerry Tonkin-Hill gqt20@cam.ac.uk, g.tonkinhill@gmail.com
Collection: -
Maturity: Stable
Publications
- Fast hierarchical Bayesian analysis of population structure.
- Tonkin-Hill G, Lees JA, Bentley SD, Frost SDW, Corander J (2019). Fast hierarchical Bayesian analysis of population structure. Nucleic Acids Res 47(11): 5539-5549.
- https://doi.org/10.1093/nar/gkz361
- PMID: 31076776
- PMC: PMC6582336
Download and documentation
Documentation: https://github.com/gtonkinhill/fastbaps/blob/master/README.md
Home page: https://github.com/gtonkinhill/fastbaps
Links: https://github.com/gtonkinhill/fastbaps/tree/master/vignettes
< Back to DB search