flowCL

The software tool flowCL provides automated semantic labelling of cell populations based on their surface markers for flow cytometry data analysis. This approach allows for reproducible and unambiguous identification of standardized cell types, which is critical in the analysis of flow cytometry data.

Topic

Cell biology

Detail

  • Operation: Spectral analysis

  • Software interface: Command-line user interface;Library

  • Language: R

  • License: Artistic-2.0

  • Cost: Free

  • Version name: 1.35.0

  • Credit: National Institutes of Health (NIH, National Institute of Biomedical Imaging and Bioengineering (NIBIB), Human Immunology Project Consortium (HIPC), Natural Sciences and Engineering Research Council of Canada, National Institute of General Medical Sciences (NIGMS).

  • Input: -

  • Output: -

  • Contact: jmeskas@bccrc.ca

  • Collection: -

  • Maturity: Stable

Publications

  • flowCL: ontology-based cell population labelling in flow cytometry.
  • Courtot M, et al. flowCL: ontology-based cell population labelling in flow cytometry. flowCL: ontology-based cell population labelling in flow cytometry. 2015; 31:1337-9. doi: 10.1093/bioinformatics/btu807
  • https://doi.org/10.1093/bioinformatics/btu807
  • PMID: 25481008
  • PMC: PMC4393520

Download and documentation

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