haploR

The software tool 'haploR' is an R package that queries the web-based genome annotation tools HaploReg and RegulomeDB. It gathers information in a data frame suitable for downstream bioinformatic analyses, streamlining analysis for rapid discovery and interpretation of genetic associations. Keywords associated with 'haploR' include R, data mining, databases, genetic variants, genome annotation, and genomics.

Topic

GWAS study;DNA polymorphism;Mapping

Detail

  • Operation: Query and retrieval;Text mining;Gene expression QTL analysis

  • Software interface: Library

  • Language: R

  • License: GNU General Public License v3

  • Cost: Free

  • Version name: 1.4.4

  • Credit: The National Institute on Aging of the National Institutes of Health (NIA-NIH).

  • Input: -

  • Output: -

  • Contact: Ilya Y. Zhbannikov ilya.zhbannikov@duke.edu

  • Collection: -

  • Maturity: Stable

Publications

  • haploR: an R package for querying web-based annotation tools
  • Zhbannikov IY, et al. haploR: an R package for querying web-based annotation tools. haploR: an R package for querying web-based annotation tools. 2017; 6:97. doi: 10.12688/f1000research.10742.2
  • https://doi.org/10.12688/f1000research.10742.2
  • PMID: 28620455
  • PMC: PMC5461892

Download and documentation

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