iAdmix

iAdmix is a tool for estimating individual admixtures using DNA sequence data. The iAdmix algorithm uses Broyden–Fletcher–Goldfarb–Shanno (BFGS) algorithm.

Topic

Sequencing;Genotyping experiment;Genetics;Exome sequencing;DNA

Detail

  • Operation: Genotyping

  • Software interface: Command-line user interface

  • Language: Python

  • License: The MIT License

  • Cost: Free

  • Version name: 1.0.0

  • Credit: National Institutes of Health (NIH).

  • Input: BAM or rsid genotype pairs

  • Output: admixture coefficients by population/individual

  • Contact: -

  • Collection: -

  • Maturity: -

Publications

  • Fast individual ancestry inference from DNA sequence data leveraging allele frequencies for multiple populations.
  • Bansal V, Libiger O. Fast individual ancestry inference from DNA sequence data leveraging allele frequencies for multiple populations. BMC Bioinformatics. 2015 Jan 16;16:4. doi: 10.1186/s12859-014-0418-7. PMID: 25592880; PMCID: PMC4301802.
  • https://doi.org/10.1186/s12859-014-0418-7
  • PMID: 25592880
  • PMC: PMC4301802

Download and documentation

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