iMir

iMir is a software tool to analyze non-coding small RNA-Seq (sRNA-Seq) datasets exhaustively. The iMir algorithm includes functions for quality filtering, adapter trimming, differential expression analysis, and prediction of biological targets, among others.

Topic

Functional genomics

Detail

  • Operation: Analysis

  • Software interface: Command-line user interface

  • Language: The GNU General Public License v3.0

  • License: -

  • Cost: Free

  • Version name: -

  • Credit: Italian Ministry for Education, University and Research, Italian Association for Cancer Research, Fondazione Umberto Veronesi’, EU SeqAhead COST Action, CNR Epigen Flagship Project, University of Salerno, ‘Mario e Valeria Rindi’ fellowship of the Italian Foundation for Cancer Research, ‘Vladimir Ashkenazy’ fellowship of Italian Association for Cancer Research, “Young Investigator Programme” fellowship of the Fondazione ‘Umberto Veronesi’, University of Napoli ‘Federico II’, “Experimental Physiopathology and Neurosciences”, Second University of Napoli.

  • Input: -

  • Output: -

  • Contact: Giorgio Giurato ggiurato@unisa.it, Maria Rosaria De Filippo mdefilippo@unisa.it, Antonio Rinaldi arinaldi@unisa.it, Adnan Hashim ahashim@unisa.it, Giovanni Nassa gnassa@unisa.it, Maria Ravo mravo@unisa.it, Francesca Rizzo frizzo@unisa.it, Roberta Tarallo rtarallo@unisa.it, Alessandro Weisz aweisz@unisa.it

  • Collection: -

  • Maturity: -

Publications

  • iMir: an integrated pipeline for high-throughput analysis of small non-coding RNA data obtained by smallRNA-Seq.
  • Giurato G, De Filippo MR, Rinaldi A, Hashim A, Nassa G, Ravo M, Rizzo F, Tarallo R, Weisz A. iMir: an integrated pipeline for high-throughput analysis of small non-coding RNA data obtained by smallRNA-Seq. BMC Bioinformatics. 2013 Dec 13;14:362. doi: 10.1186/1471-2105-14-362. PMID: 24330401; PMCID: PMC3878829.
  • https://doi.org/10.1186/1471-2105-14-362
  • PMID: 24330401
  • PMC: PMC3878829

Download and documentation

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