l1kdeconv

l1kdeconv is an R tool to deconvolute scanned LINCS L1000 project data to infer gene expression values. The 1kdeconv algorithm uses a novel outlier detection method and an aggregate Gaussian mixture model.

Topic

Gene expression

Detail

  • Operation: Expression analysis

  • Software interface: Library

  • Language: R

  • License: Library

  • Cost: Free

  • Version name: 1.2.0

  • Credit: The ECE department and Texas A&M Engineering Experiment Station-Dwight Look College of Engineering at Texas A&M University, TEES-AgriLife Center for Bioinformatics and Genomic Systems Engineering (CBGSE) at Texas A&M University.

  • Input: -

  • Output: -

  • Contact: Zhao Li lizhao.informatics@gmail.com

  • Collection: -

  • Maturity: Stable

Publications

  • l1kdeconv: an R package for peak calling analysis with LINCS L1000 data.
  • Li Z, Li J, Yu P. l1kdeconv: an R package for peak calling analysis with LINCS L1000 data. BMC Bioinformatics. 2017 Jul 27;18(1):356. doi: 10.1186/s12859-017-1767-9. PMID: 28750623; PMCID: PMC5532784.
  • https://doi.org/10.1186/s12859-017-1767-9
  • PMID: 28750623
  • PMC: PMC5532784

Download and documentation

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