limmaGUI

limmaGUI is a graphical user interface (GUI) based on R-Tcl/Tk, designed for two-color spotted microarray experiments. It provides an interface to the statistical methods of the limma package for R, with point-and-click access to a range of methods for background correction, normalization, graphical display, and analysis of microarray data. It accommodates complex experiments involving multiple RNA sources using linear models and contrasts, and provides integrated support for quantitative spot quality weights, control spots, within-array replicate spots, and multiple testing.

Topic

Gene expression;Bioinformatics

Detail

  • Operation: RNA-Seq analysis

  • Software interface: Command-line user interface;Library

  • Language: -

  • License: GNU General Public License v2

  • Cost: Free

  • Version name: 1.74.0

  • Credit: -

  • Input: -

  • Output: -

  • Contact: James M. Wettenhall wettenhall@wehi.edu.au, hu@wehi.edu.au, smyth@wehi.edu.au, keith@wehi.edu.au

  • Collection: -

  • Maturity: Mature

Publications

  • limmaGUI: a graphical user interface for linear modeling of microarray data.
  • Wettenhall JM and Smyth GK. limmaGUI: a graphical user interface for linear modeling of microarray data. limmaGUI: a graphical user interface for linear modeling of microarray data. 2004; 20:3705-6. doi: 10.1093/bioinformatics/bth449
  • https://doi.org/10.1093/bioinformatics/bth449
  • PMID: 15297296
  • PMC: -

Download and documentation

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