linkcomm

linkcomm is an R tool to analyze and visualize Overlapping Cluster Generator communities in biological networks to expose overlapping structures and critical nodes.

Topic

Systems biology;Molecular interactions, pathways and networks

Detail

  • Operation: Pathway or network analysis

  • Software interface: Command-line user interface

  • Language: R, C++

  • License: GNU General Public License v2 | v3

  • Cost: Free

  • Version name: 1.0-14

  • Credit: The Human Frontier Science Program (HFSP) Young Investigators Grant.

  • Input: -

  • Output: -

  • Contact: Alex T. Kalinka alex.t.kalinka@gmail.com

  • Collection: -

  • Maturity: -

Publications

  • linkcomm: an R package for the generation, visualization, and analysis of link communities in networks of arbitrary size and type.
  • Kalinka AT, Tomancak P. linkcomm: an R package for the generation, visualization, and analysis of link communities in networks of arbitrary size and type. Bioinformatics. 2011 Jul 15;27(14):2011-2. doi: 10.1093/bioinformatics/btr311. Epub 2011 May 19. PMID: 21596792; PMCID: PMC3129527.
  • https://doi.org/10.1093/bioinformatics/btr311
  • PMID: 21596792
  • PMC: PMC3129527

Download and documentation

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