massMap

massMap is a software tool for two-stage microbial association mapping using binary, continuous, and survival traits data sets. The massMap algorithm uses microbial group test OMiAT, or microbiome-based survival analysis tool OMiSA, and Hierarchical BH (HBH) and selected subset testing (SST) procedures to control the advanced false discovery rate (FDR) control.

Topic

Taxonomy;Microbial ecology;Mapping

Detail

  • Operation: Taxonomic classification

  • Software interface: Library

  • Language: R

  • License: GNU General Public License v2

  • Cost: Free

  • Version name: -

  • Credit: NIH, the Diane Belfer Program in Human Microbial Ecology, and the C&D Fund.

  • Input: -

  • Output: -

  • Contact: Jiyuan Hu Jiyuan.Hu@nyumc.com

  • Collection: -

  • Maturity: -

Publications

  • A two-stage microbial association mapping framework with advanced FDR control.
  • Hu J, Koh H, He L, Liu M, Blaser MJ, Li H. A two-stage microbial association mapping framework with advanced FDR control. Microbiome. 2018 Jul 25;6(1):131. doi: 10.1186/s40168-018-0517-1. PMID: 30045760; PMCID: PMC6060480.
  • https://doi.org/10.1186/s40168-018-0517-1
  • PMID: 30045760
  • PMC: PMC6060480

Download and documentation

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